{
  "_id": "6a33c5a03efcd9bda43b1714",
  "Package": "mbRes",
  "Type": "Package",
  "Title": "Exploration of Multiple Biomarker Responses using Effect Size",
  "Version": "0.1.8",
  "Authors@R": "c(person(\"Duy Nghia\", \"Pham\", email = \"nghiapham@yandex.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1349-1710\")),\nperson(\"Inna M.\", \"Sokolova\",\nrole = \"ths\", comment = c(ORCID = \"0000-0002-2068-4302\")))",
  "Description": "Summarize multiple biomarker responses of aquatic\norganisms to contaminants using Cliff’s delta, as described in\nPham & Sokolova (2023) <doi:10.1002/ieam.4676>.",
  "BugReports": "https://github.com/phamdn/mbRes/issues",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://phamdn.r-universe.dev",
  "Date/Publication": "2024-08-31 14:36:42 UTC",
  "RemoteUrl": "https://github.com/phamdn/mbres",
  "RemoteRef": "HEAD",
  "RemoteSha": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-18 10:14:08 UTC",
    "User": "root"
  },
  "Author": "Duy Nghia Pham [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-1349-1710>),\nInna M. Sokolova [ths] (ORCID: <https://orcid.org/0000-0002-2068-4302>)",
  "Maintainer": "Duy Nghia Pham <nghiapham@yandex.com>",
  "MD5sum": "cdcc962043ca2968c0329993bdabb5f4",
  "_user": "phamdn",
  "_type": "src",
  "_file": "mbRes_0.1.8.tar.gz",
  "_fileid": "cf1b8e8af07becd3140a2766274b9ba054bd23cd7da0db5d67cfd10d179fab58",
  "_filesize": 195059,
  "_sha256": "cf1b8e8af07becd3140a2766274b9ba054bd23cd7da0db5d67cfd10d179fab58",
  "_created": "2026-06-18T10:14:08.000Z",
  "_published": "2026-06-18T10:17:04.175Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 82106333507,
      "time": 125,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7720494482"
    },
    {
      "job": 82106333518,
      "time": 140,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7720500362"
    },
    {
      "job": 82106333584,
      "time": 94,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7720483074"
    },
    {
      "job": 82106333539,
      "time": 104,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7720486593"
    },
    {
      "job": 82105881148,
      "time": 144,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7720448223"
    },
    {
      "job": 82106333555,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7720487275"
    },
    {
      "job": 82106333593,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7720486589"
    },
    {
      "job": 82106333579,
      "time": 83,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7720480268"
    },
    {
      "job": 82106333588,
      "time": 98,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7720484553"
    }
  ],
  "_buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/phamdn/mbres",
  "_commit": {
    "id": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
    "author": "phamdn <48892803+phamdn@users.noreply.github.com>",
    "committer": "phamdn <48892803+phamdn@users.noreply.github.com>",
    "message": "Update README.md\n",
    "time": 1725115002
  },
  "_maintainer": {
    "name": "Duy Nghia Pham",
    "email": "nghiapham@yandex.com",
    "login": "phamdn",
    "description": "",
    "uuid": 48892803,
    "orcid": "0000-0003-1349-1710"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.4.1",
      "role": "Imports"
    },
    {
      "package": "cowplot",
      "version": ">= 1.1.1",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "version": ">= 2.0.3",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "version": ">= 3.2.1",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "version": ">= 1.1.1",
      "role": "Imports"
    },
    {
      "package": "forcats",
      "version": ">= 1.0.0",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "version": ">= 1.3.0",
      "role": "Imports"
    },
    {
      "package": "purrr",
      "version": ">= 1.0.1",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "version": ">= 1.14.8",
      "role": "Imports"
    },
    {
      "package": "scales",
      "version": ">= 1.2.1",
      "role": "Imports"
    },
    {
      "package": "RProbSup",
      "version": ">= 3.0",
      "role": "Suggests"
    }
  ],
  "_owner": "phamdn",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "phamdn",
      "count": 17,
      "uuid": 48892803
    }
  ],
  "_userbio": {
    "uuid": 48892803,
    "type": "user",
    "name": "phamdn",
    "followers": 1
  },
  "_downloads": {
    "count": 240,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mbRes"
  },
  "_devurl": "https://github.com/phamdn/mbres",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mbRes.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/phamdn/mbres",
  "_realowner": "phamdn",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-05-19"
    },
    {
      "version": "0.1.1",
      "date": "2021-09-02"
    },
    {
      "version": "0.1.2",
      "date": "2021-12-14"
    },
    {
      "version": "0.1.3",
      "date": "2022-01-29"
    },
    {
      "version": "0.1.4",
      "date": "2022-08-24"
    },
    {
      "version": "0.1.5",
      "date": "2022-09-24"
    },
    {
      "version": "0.1.6",
      "date": "2022-12-18"
    },
    {
      "version": "0.1.7",
      "date": "2023-03-29"
    }
  ],
  "_exports": [
    "beliaeff2002",
    "blaise2002",
    "cliff",
    "compare",
    "ggdot",
    "ggheat",
    "mbr",
    "mbr.cliff",
    "mbr.glass",
    "plotsam",
    "resampling",
    "setpop",
    "simul",
    "visual"
  ],
  "_datasets": [
    {
      "name": "ecorelevance",
      "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters",
      "object": "sokolova2021",
      "file": "sokolova2021.RData",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Biomarker",
        "Eco"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    },
    {
      "name": "sokolova2021",
      "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters",
      "object": "sokolova2021",
      "file": "sokolova2021.RData",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Exposure",
        "NRR",
        "ROS",
        "TBARSd",
        "TBARSg",
        "PCd",
        "PCg",
        "CPRd",
        "CPRg",
        "ERODd",
        "ERODg",
        "CEd",
        "CEg",
        "GSTd",
        "GSTg",
        "GRd",
        "GRg",
        "CTSDTd",
        "CTSDTg",
        "CTSDFd",
        "CTSDFg",
        "Cas2",
        "Cas3",
        "BAX",
        "Bcl-2",
        "p53",
        "GADD45",
        "NF-kB",
        "IL-17",
        "COX-2",
        "ACC"
      ],
      "rows": 30,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "mbRes-package",
      "title": "mbRes: Exploration of Multiple Biomarker Responses using Effect Size",
      "topics": [
        "mbRes-package"
      ]
    },
    {
      "page": "beliaeff2002",
      "title": "Compute Integrated Biomarker Index",
      "topics": [
        "beliaeff2002"
      ]
    },
    {
      "page": "blaise2002",
      "title": "Compute Rank Sum Biomarker Index",
      "topics": [
        "blaise2002"
      ]
    },
    {
      "page": "cliff",
      "title": "Compute Effect Size",
      "topics": [
        "cliff"
      ]
    },
    {
      "page": "compare",
      "title": "Compare RSI, IBR, and Cliff's delta",
      "topics": [
        "compare"
      ]
    },
    {
      "page": "ggbar",
      "title": "Make Bar Plot",
      "topics": [
        "ggbar"
      ]
    },
    {
      "page": "ggdot",
      "title": "Make Dot Plot",
      "topics": [
        "ggdot"
      ]
    },
    {
      "page": "ggheat",
      "title": "Make Heatmap",
      "topics": [
        "ggheat"
      ]
    },
    {
      "page": "mbr",
      "title": "Compute Cliff's delta and S-value",
      "topics": [
        "mbr"
      ]
    },
    {
      "page": "mbr.cliff",
      "title": "Compute Cliff's delta simplified",
      "topics": [
        "mbr.cliff"
      ]
    },
    {
      "page": "mbr.glass",
      "title": "Compute Glass's delta simplified",
      "topics": [
        "mbr.glass"
      ]
    },
    {
      "page": "perch",
      "title": "Empirical Case Study Analysis",
      "topics": [
        "perch"
      ]
    },
    {
      "page": "plotsam",
      "title": "Visualize Hypothetical Samples",
      "topics": [
        "plotsam"
      ]
    },
    {
      "page": "resampling",
      "title": "Measure Statistical Uncertainty",
      "topics": [
        "resampling"
      ]
    },
    {
      "page": "setpop",
      "title": "Define Hypothetical Populations",
      "topics": [
        "setpop"
      ]
    },
    {
      "page": "simul",
      "title": "Generate Hypothetical Samples",
      "topics": [
        "simul"
      ]
    },
    {
      "page": "sokolova2021",
      "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters",
      "topics": [
        "ecorelevance",
        "sokolova2021"
      ]
    },
    {
      "page": "visual",
      "title": "Visualize Cliff's delta and S-value",
      "topics": [
        "visual"
      ]
    }
  ],
  "_pkglogo": "https://github.com/phamdn/mbres/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/phamdn/mbres/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cowplot",
    "cpp11",
    "data.table",
    "dplyr",
    "farver",
    "forcats",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "purrr",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "mbres",
  "_universes": [
    "phamdn"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.8",
      "date": "2026-06-18T10:16:03.000Z",
      "distro": "noble",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "ce664df9d4e57d4919b990943d03ea15d0cd1504db58f174ebcdfe5e2e7983c4",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.8",
      "date": "2026-06-18T10:16:16.000Z",
      "distro": "noble",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "743d0e34c8ef2101b97f3c842dc4dfe84dd661fe59316b8844fbe6448c8f7b5c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.8",
      "date": "2026-06-18T10:15:39.000Z",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "cee02dee81aa7d621f5e5eeba256fd9e4ea4cde3148e008c7206d453dab32b40",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.8",
      "date": "2026-06-18T10:15:49.000Z",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "55affad67b86d737ce4583c17337631181f6de70580de90f6a02b8abdfdee223",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.8",
      "date": "2026-06-18T10:16:09.000Z",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "64418797963e2bb6e4bb5b4ffdba207bdd77a384eaecc19145131810036dc4af",
      "status": "success",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.8",
      "date": "2026-06-18T10:15:35.000Z",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "58cb6ba9d970d1c7addbf93c997e141cfb4eeb4f0e95f88bdafc0ce049d3f3b0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.8",
      "date": "2026-06-18T10:15:19.000Z",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "e6cdb4a5f718fa7bc231bb5265299d25ca9ac6f8717ba557080ee6cf0fd3fc3f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.8",
      "date": "2026-06-18T10:15:26.000Z",
      "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504",
      "fileid": "ba9695bbe690e4b8c91dc080477635a5df77ceda87ef49812261d90a9a56f28d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/phamdn/actions/runs/27752395853"
    }
  ]
}