{ "_id": "6a1ef5b9b401979e73416f2e", "Package": "mbRes", "Type": "Package", "Title": "Exploration of Multiple Biomarker Responses using Effect Size", "Version": "0.1.8", "Authors@R": "c(person(\"Duy Nghia\", \"Pham\", email = \"nghiapham@yandex.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1349-1710\")),\nperson(\"Inna M.\", \"Sokolova\",\nrole = \"ths\", comment = c(ORCID = \"0000-0002-2068-4302\")))", "Description": "Summarize multiple biomarker responses of aquatic\norganisms to contaminants using Cliff’s delta, as described in\nPham & Sokolova (2023) .", "BugReports": "https://github.com/phamdn/mbRes/issues", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://phamdn.r-universe.dev", "Date/Publication": "2024-08-31 14:36:42 UTC", "RemoteUrl": "https://github.com/phamdn/mbres", "RemoteRef": "HEAD", "RemoteSha": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-19 06:48:02 UTC", "User": "root" }, "Author": "Duy Nghia Pham [aut, cre] (ORCID:\n),\nInna M. Sokolova [ths] (ORCID: )", "Maintainer": "Duy Nghia Pham ", "MD5sum": "3abb2e19ad2c60f4842078513a247dc4", "_user": "phamdn", "_type": "src", "_file": "mbRes_0.1.8.tar.gz", "_fileid": "f2e5691cdfc2d398e9c5150f366de414037ce9f55576a396dc722c83249b6b0c", "_filesize": 193845, "_sha256": "f2e5691cdfc2d398e9c5150f366de414037ce9f55576a396dc722c83249b6b0c", "_created": "2026-05-19T06:48:02.000Z", "_published": "2026-06-02T15:24:41.332Z", "_distro": "noble", "_jobs": [ { "job": 79107310454, "time": 136, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7076699888" }, { "job": 79107311472, "time": 135, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7076699947" }, { "job": 79107311465, "time": 94, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7076688781" }, { "job": 79107311431, "time": 119, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7076695178" }, { "job": 79107309428, "time": 183, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7076662170" }, { "job": 79107309298, "time": 103, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7362149833" }, { "job": 79107310905, "time": 98, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7076689941" }, { "job": 79107311513, "time": 78, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7076684326" }, { "job": 79107311246, "time": 83, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7076685576" } ], "_buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/phamdn/mbres", "_commit": { "id": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "author": "phamdn <48892803+phamdn@users.noreply.github.com>", "committer": "phamdn <48892803+phamdn@users.noreply.github.com>", "message": "Update README.md\n", "time": 1725115002 }, "_maintainer": { "name": "Duy Nghia Pham", "email": "nghiapham@yandex.com", "login": "phamdn", "description": "", "uuid": 48892803, "orcid": "0000-0003-1349-1710" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.4.1", "role": "Imports" }, { "package": "cowplot", "version": ">= 1.1.1", "role": "Imports" }, { "package": "magrittr", "version": ">= 2.0.3", "role": "Imports" }, { "package": "tibble", "version": ">= 3.2.1", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.1.1", "role": "Imports" }, { "package": "forcats", "version": ">= 1.0.0", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.3.0", "role": "Imports" }, { "package": "purrr", "version": ">= 1.0.1", "role": "Imports" }, { "package": "data.table", "version": ">= 1.14.8", "role": "Imports" }, { "package": "scales", "version": ">= 1.2.1", "role": "Imports" }, { "package": "RProbSup", "version": ">= 3.0", "role": "Suggests" } ], "_owner": "phamdn", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "phamdn", "count": 17, "uuid": 48892803 } ], "_userbio": { "uuid": 48892803, "type": "user", "name": "phamdn" }, "_downloads": { "count": 226, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mbRes" }, "_devurl": "https://github.com/phamdn/mbres", "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mbRes.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/phamdn/mbres", "_realowner": "phamdn", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2021-05-19" }, { "version": "0.1.1", "date": "2021-09-02" }, { "version": "0.1.2", "date": "2021-12-14" }, { "version": "0.1.3", "date": "2022-01-29" }, { "version": "0.1.4", "date": "2022-08-24" }, { "version": "0.1.5", "date": "2022-09-24" }, { "version": "0.1.6", "date": "2022-12-18" }, { "version": "0.1.7", "date": "2023-03-29" } ], "_exports": [ "beliaeff2002", "blaise2002", "cliff", "compare", "ggdot", "ggheat", "mbr", "mbr.cliff", "mbr.glass", "plotsam", "resampling", "setpop", "simul", "visual" ], "_datasets": [ { "name": "ecorelevance", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "object": "sokolova2021", "file": "sokolova2021.RData", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Biomarker", "Eco" ], "rows": 30, "table": true, "tojson": true }, { "name": "sokolova2021", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "object": "sokolova2021", "file": "sokolova2021.RData", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Exposure", "NRR", "ROS", "TBARSd", "TBARSg", "PCd", "PCg", "CPRd", "CPRg", "ERODd", "ERODg", "CEd", "CEg", "GSTd", "GSTg", "GRd", "GRg", "CTSDTd", "CTSDTg", "CTSDFd", "CTSDFg", "Cas2", "Cas3", "BAX", "Bcl-2", "p53", "GADD45", "NF-kB", "IL-17", "COX-2", "ACC" ], "rows": 30, "table": true, "tojson": true } ], "_help": [ { "page": "mbRes-package", "title": "mbRes: Exploration of Multiple Biomarker Responses using Effect Size", "topics": [ "mbRes-package" ] }, { "page": "beliaeff2002", "title": "Compute Integrated Biomarker Index", "topics": [ "beliaeff2002" ] }, { "page": "blaise2002", "title": "Compute Rank Sum Biomarker Index", "topics": [ "blaise2002" ] }, { "page": "cliff", "title": "Compute Effect Size", "topics": [ "cliff" ] }, { "page": "compare", "title": "Compare RSI, IBR, and Cliff's delta", "topics": [ "compare" ] }, { "page": "ggbar", "title": "Make Bar Plot", "topics": [ "ggbar" ] }, { "page": "ggdot", "title": "Make Dot Plot", "topics": [ "ggdot" ] }, { "page": "ggheat", "title": "Make Heatmap", "topics": [ "ggheat" ] }, { "page": "mbr", "title": "Compute Cliff's delta and S-value", "topics": [ "mbr" ] }, { "page": "mbr.cliff", "title": "Compute Cliff's delta simplified", "topics": [ "mbr.cliff" ] }, { "page": "mbr.glass", "title": "Compute Glass's delta simplified", "topics": [ "mbr.glass" ] }, { "page": "perch", "title": "Empirical Case Study Analysis", "topics": [ "perch" ] }, { "page": "plotsam", "title": "Visualize Hypothetical Samples", "topics": [ "plotsam" ] }, { "page": "resampling", "title": "Measure Statistical Uncertainty", "topics": [ "resampling" ] }, { "page": "setpop", "title": "Define Hypothetical Populations", "topics": [ "setpop" ] }, { "page": "simul", "title": "Generate Hypothetical Samples", "topics": [ "simul" ] }, { "page": "sokolova2021", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "topics": [ "ecorelevance", "sokolova2021" ] }, { "page": "visual", "title": "Visualize Cliff's delta and S-value", "topics": [ "visual" ] } ], "_pkglogo": "https://github.com/phamdn/mbres/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/phamdn/mbres/raw/HEAD/README.md", "_rundeps": [ "cli", "cowplot", "cpp11", "data.table", "dplyr", "farver", "forcats", "generics", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "RColorBrewer", "rlang", "S7", "scales", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "mbres", "_universes": [ "phamdn" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.8", "date": "2026-05-19T06:50:11.000Z", "distro": "noble", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "f6485a6010b5f408733677f68944b17a724750800a52f0f462c70cec719c33ce", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.6.0", "os": "linux", "version": "0.1.8", "date": "2026-05-19T06:50:11.000Z", "distro": "noble", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "606ad500990dfa3f3860a4e6df706e988a7c109be10ddf6b66616e857a279e5e", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.5.3", "os": "mac", "version": "0.1.8", "date": "2026-05-19T06:49:40.000Z", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "30dbf341a6f8c5ef3479ed3dcc2e45728172f353a131c391ea1ea910f9176856", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.6.0", "os": "mac", "version": "0.1.8", "date": "2026-05-19T06:50:00.000Z", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "eda1c5a6b0a5075dbbf743bbc5d4fea96c4ab6e40e9426e3be6780ea13afd3b3", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.7.0", "os": "win", "version": "0.1.8", "date": "2026-05-19T06:49:31.000Z", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "8f44836334fcf16cbfc97e4cf241af235ff1c5a20d649398303f05245b0b0b96", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.5.3", "os": "win", "version": "0.1.8", "date": "2026-05-19T06:49:15.000Z", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "3b12c98076cd8159e49f6657130b390992314fabc738f54ccd928bf54b598dc2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.6.0", "os": "win", "version": "0.1.8", "date": "2026-05-19T06:49:13.000Z", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "d2cf7ebe8a82bc67f63cc1c066caa28e43b254c48eb1a115d14761bb083655ad", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.8", "date": "2026-06-02T15:24:19.000Z", "commit": "01a207c2e6f9c59a7ceba9752bf38cccfbcf6504", "fileid": "f99bf925f4ed65547b40e8849fed7b3e12d3c3743cd16cff708a5a2282f78bad", "status": "success", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/26081011513" } ] }