{ "_id": "6accc5dda14063b82c3a9008", "Package": "peramo", "Type": "Package", "Title": "Permutation Tests for Randomization Model", "Version": "0.1.5", "Authors@R": "c(person(\"Duy Nghia\", \"Pham\", email = \"nghiapham@yandex.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1349-1710\")),\nperson(\"Inna M.\", \"Sokolova\", role = \"ths\",\ncomment = c(ORCID = \"0000-0002-2068-4302\")))", "Description": "Perform permutation-based hypothesis testing for\nrandomized experiments as suggested in Ludbrook & Dudley (1998)\n and Ernst (2004)\n, introduced in Pham et al.\n(2022) .", "BugReports": "https://github.com/phamdn/peramo/issues", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "LazyData": "true", "Config/pak/sysreqs": "cmake make", "Repository": "https://phamdn.r-universe.dev", "Date/Publication": "2025-09-08 17:08:44 UTC", "RemoteUrl": "https://github.com/phamdn/peramo", "RemoteRef": "HEAD", "RemoteSha": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-12 11:31:06 UTC", "User": "root" }, "Author": "Duy Nghia Pham [aut, cre] (ORCID:\n),\nInna M. Sokolova [ths] (ORCID: )", "Maintainer": "Duy Nghia Pham ", "_user": "phamdn", "_type": "src", "_file": "peramo_0.1.5.tar.gz", "_fileid": "https://r2.ropensci.org/304f38973c6746a63da135f1490a65dab934e652dabc7ad269815abbb9e68e93", "_filesize": 214197, "_sha256": "304f38973c6746a63da135f1490a65dab934e652dabc7ad269815abbb9e68e93", "_expires": "2027-01-20T11:34:51.000Z", "_created": "2026-10-12T11:31:06.000Z", "_published": "2026-10-12T11:34:53.152Z", "_buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114790606168, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11743997636" }, { "job": 114790606136, "time": 137, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11744171713" }, { "job": 114790606180, "time": 106, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11743632851" }, { "job": 114790606126, "time": 179, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11744051952" }, { "job": 114789593268, "time": 167, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11744256239" }, { "job": 114790606139, "time": 86, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11744006741" }, { "job": 114790606178, "time": 98, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11744046816" }, { "job": 114790606157, "time": 105, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11743522850" }, { "job": 114790606123, "time": 106, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11743852631" } ], "_upstream": "https://github.com/phamdn/peramo", "_commit": { "id": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "author": "phamdn <48892803+phamdn@users.noreply.github.com>", "committer": "phamdn <48892803+phamdn@users.noreply.github.com>", "message": "0.1.5\n", "time": 1757351324 }, "_maintainer": { "name": "Duy Nghia Pham", "email": "nghiapham@yandex.com", "login": "phamdn", "description": "", "uuid": 48892803, "orcid": "0000-0003-1349-1710" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "magrittr", "version": ">= 2.0.3", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.1.2", "role": "Imports" }, { "package": "lme4", "version": ">= 1.1-33", "role": "Imports" }, { "package": "parameters", "version": ">= 0.21.0", "role": "Imports" }, { "package": "emmeans", "version": ">= 1.8.6", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "multcompView", "version": ">= 0.1-9", "role": "Suggests" } ], "_owner": "phamdn", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "phamdn", "count": 12, "uuid": 48892803 } ], "_userbio": { "uuid": 48892803, "type": "user", "name": "phamdn", "followers": 2 }, "_downloads": { "count": 335, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/peramo" }, "_devurl": "https://github.com/phamdn/peramo", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/peramo.html", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/phamdn/peramo", "_realowner": "phamdn", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2022-08-10" }, { "version": "0.1.1", "date": "2022-12-19" }, { "version": "0.1.2", "date": "2023-03-29" }, { "version": "0.1.3", "date": "2023-05-31" }, { "version": "0.1.5", "date": "2025-09-08" } ], "_exports": [ "AB", "diffcalc", "nolesser", "owl", "owlStat", "tw_complex", "twl", "twlStat", "XY" ], "_datasets": [ { "name": "ctm_Cu", "title": "Biomarker Responses of the Ragworms to Copper and Warming", "object": "ctm", "class": [ "data.frame" ], "fields": [ "exp_unit", "copper", "temp", "run", "sediment", "porewater", "body" ], "rows": 60, "table": true, "tojson": true }, { "name": "ctm_worm", "title": "Biomarker Responses of the Ragworms to Copper and Warming", "object": "ctm", "class": [ "data.frame" ], "fields": [ "obs_unit", "exp_unit", "copper", "temp", "run", "survival", "mass", "carb", "lipid", "protein", "Ea", "ETS", "CEA", "MGO", "MDA", "PC", "ATP7A", "CCS", "MTS", "MTL", "GSTO1", "HSP70MAJ", "HSP70MIN", "HBL2", "GAPDH", "HIS3" ], "rows": 210, "table": true, "tojson": true }, { "name": "mussel_digest", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "object": "ensulizole", "class": [ "data.frame" ], "fields": [ "group", "CPR", "CES", "GST", "GR", "GSH", "TAC", "MDA", "PC", "PRO", "CARB", "MGO", "CTSD", "Bcl-2", "Bax", "Cas2", "Cas3", "Cas8", "NF-κB", "CHUK", "TBK1", "TGF-β", "TNF", "GADD45" ], "rows": 120, "table": true, "tojson": true }, { "name": "mussel_gill", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "object": "ensulizole", "class": [ "data.frame" ], "fields": [ "group", "CPR", "CES", "GST", "GR", "GSH", "TAC", "MDA", "PC", "PRO", "CARB", "MGO", "CTSD", "Bcl-2", "Bax", "Cas2", "Cas3", "Cas8", "NF-κB", "CHUK", "TBK1", "TGF-β", "TNF", "GADD45" ], "rows": 120, "table": true, "tojson": true }, { "name": "mussel_SoS", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "object": "ensulizole", "class": [ "data.frame" ], "fields": [ "day", "CT", "E1", "E2", "E3", "E4", "E5" ], "rows": 15, "table": true, "tojson": true } ], "_help": [ { "page": "AB", "title": "Two-Group Permutation Test", "topics": [ "AB" ] }, { "page": "ctm", "title": "Biomarker Responses of the Ragworms to Copper and Warming", "topics": [ "ctm", "ctm_Cu", "ctm_worm" ] }, { "page": "diffcalc", "title": "Calculate the Differences between Means", "topics": [ "diffcalc" ] }, { "page": "ensulizole", "title": "Biomarker Responses of the Blue Mussels to Organic UV Filters", "topics": [ "ensulizole", "mussel_digest", "mussel_gill", "mussel_SoS" ] }, { "page": "nolesser", "title": "Compare the Differences with Critical Values", "topics": [ "nolesser" ] }, { "page": "owl", "title": "One-Way Layout Permutation Test", "topics": [ "owl" ] }, { "page": "owlStat", "title": "Test Statistics for One-Way Layout Permutation Test", "topics": [ "owlStat" ] }, { "page": "tw_complex", "title": "Permutation Test for Two-Way Layout with Extra Factors", "topics": [ "tw_complex" ] }, { "page": "twl", "title": "Two-Way Layout Permutation Test", "topics": [ "twl" ] }, { "page": "twlStat", "title": "Test Statistics for Two-Way Layout Permutation Test", "topics": [ "twlStat" ] }, { "page": "XY", "title": "Permutation Test for Correlation Between Paired Samples", "topics": [ "XY" ] } ], "_pkglogo": "https://github.com/phamdn/peramo/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/phamdn/peramo/raw/HEAD/README.md", "_rundeps": [ "bayestestR", "boot", "cli", "datawizard", "dplyr", "emmeans", "estimability", "generics", "glue", "insight", "lattice", "lifecycle", "lme4", "magrittr", "MASS", "Matrix", "minqa", "mvtnorm", "nlme", "nloptr", "numDeriv", "parameters", "pillar", "pkgconfig", "R6", "rbibutils", "Rcpp", "RcppEigen", "Rdpack", "reformulas", "rlang", "tibble", "tidyselect", "utf8", "vctrs", "withr" ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "peramo", "_universes": [ "phamdn" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.5", "date": "2026-10-12T11:33:35.000Z", "distro": "resolute", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/3e5cabaac3c191f79fc4a278820d1650ac8e1a7cd01e46ce19a16d46688672ed", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.6.1", "os": "linux", "version": "0.1.5", "date": "2026-10-12T11:33:00.000Z", "distro": "resolute", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/d01486c40a63ee229cde2c3f02513710fbd4d227730d31020da8ff366a074b3b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.5.3", "os": "mac", "version": "0.1.5", "date": "2026-10-12T11:32:46.000Z", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/536efa350146174ca7f432e20d1ba4e6b4484b5f2f122b5aa83128e4ba46fdb3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.6.1", "os": "mac", "version": "0.1.5", "date": "2026-10-12T11:33:40.000Z", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/6bfb76bd6e67ce0ed97b17b072b7b13116948e11b3688fbc4dc0ec1ec162b731", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.5", "date": "2026-10-12T11:32:54.000Z", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/a44ac0ab27fc367dee5f09df5fccfd193e1701a7fe9e31dca546f6cda9c2cd33", "status": "success", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.7.0", "os": "win", "version": "0.1.5", "date": "2026-10-12T11:32:23.000Z", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/2ea9418c6ef9d14f20c75e60b86fd31683103227fab9bd45b6280bd3066f3dd7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.5.3", "os": "win", "version": "0.1.5", "date": "2026-10-12T11:32:24.000Z", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/62970c160a9b837afa226cec6d9625185462de36e238f7293ad295962a52e2a7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" }, { "r": "4.6.1", "os": "win", "version": "0.1.5", "date": "2026-10-12T11:32:23.000Z", "commit": "067ec64c670a62c73da30d5e34123c2edaca2bbf", "fileid": "https://r2.ropensci.org/a2c9842fa9a3adfc6a6c5297d1e82b62612731d19c70bfd3bc7efcf72ed4d1db", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/phamdn/actions/runs/38242844442" } ] }